I don’t think Yoda’s acrobatic Yoda Game of Yoda Game of Thrones shirt style of lightsaber combat and mastery of the force would have served him well against a man with Anakin’s strength, reach, and stamina. In the physical realm of combat, I think Anakin would have had a large edge. On the other hand, Yoda’s deep mastery of the Force made him an ideal counterpoint to Sidious, who fought by exerting power through the force as much as by lightsaber. Yoda is the only Jedi in movie canon to deflect force lightning without a lightsaber, for example. Despite these advantages, the duel between Yoda and Sidious ends in a draw. Yoda reflects Sidious Force lightning back at him, and the blasts blow them both away. Rather than re-engage, Yoda chooses to retreat. I don’t think Obi-Wan was equipped to handle that battle.
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I think Vader would just physically Yoda Game of Yoda Game of Thrones shirt overwhelm Yoda. A couple of alternatives are possible, though. One, Yoda may have felt that going after Vader would be acting out of vengeance, and therefore treading very close to the Dark Side himself. It’s also possible Yoda lacked the resources to return to galactic civilization to find Vader. Maybe the ship that brought him to Dagobah was unable to make a return trip? Even if he did, Vader was rarely alone. Would Yoda be able to sneak aboard Vader’s star destroyer, bypass/disable hundreds or thousands of guards, and engage Vader? Doubtful.